SE3830334

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_8652
  • Solanum tuberosum
  • SE3830334
  • hAT
  • Hat13
  • chr08:35984600-35984787
  • CATCGACT
  • TCGA

Secondary structure and sequence

TSD    TIR
5'



3' 
  CA    CTAA       A    CA    TATAAGTTT        TAAATCAATTTTGTTTAG      AC   ----  GATAAACATATATTTAATTAATTTTCTAAT
    TCGA    CAGAGGC GAGC  AGGT         GGGGGTTC                  GGGTTC  ATG    TT                              
    ||||    ||||||| ||||  ||||         ||||||||                  ||||||  |||    ||                               
    AGCT    GTCTCCG CTCG  TCCA         CCCCCAAG                  CCCAAG  CCT    GG                              
CCAC    --AC       C    -A    ---------        ----------------TA      --   GTTT  GTGATCGAAAAAGCATCTGGGATATTAACA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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