SE3830335

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_8653
  • Solanum tuberosum
  • SE3830335
  • hAT
  • Hat40
  • chr12:58880697-58880922
  • ATCACAAG
  • GGGGTGGACCTAGAG

Secondary structure and sequence

TSD    TIR
5'



3' 
ATCACAAGCA  -      CC     ----G     CTCGGCAAAAAATTATGTTGTATATTTAAGGTATTTTAAGAATTCTTATGTCTATATATTTATTTTGAACCTCCTAAATG
          GG GGTGGA  TAGAG     TTGCC                                                                                
          || ||||||  |||||     |||||                                                                                 
          TC CCGCCT  GTCTT     TAATT                                                                                
 GAACACTAA  A      AA     AAAGA     CCCCCAAGCCCTTTTTTTTCTCATCACGGATTCTAAGTTTGAACTTTGAGGGAGTTGGTAATTCAGTTGGAGACTAGGAT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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