SE3830336

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_8654
  • Solanum tuberosum
  • SE3830336
  • hAT
  • Hat41
  • chr01:37631937-37632357
  • AGTACGAA
  • GTACGAACAGGGGCGGACCACGTGGGTTCCAGGGGTTCATTCGAACTCGGTAAAAA

Secondary structure and sequence

TSD    TIR
5'



3'
  A    GAA   G       -  CGT     -----CC     TTC       CTC        -ATTACA     T -   - A --- TAAATTTTCTATATTTCTGATGGTATATATATATATATATATATTGAACTCCTCAATAACAAAGGGAAACTGATGGTGTAGTGGCAAGTTCCCTTGAAATTAGGCAATACGTCAATTGTTTGAATCCCTATG
   GTAC   CAG GGCGGAC CA   GGGTT       AGGGG   ATTCGAA   GGTAAAAA       CATTA A TAT A G   G                                                                                                                                    
   ||||   ||| ||||||| ||   |||||       |||||   |||||||   ||||||||       ||||| | ||| | |   |                                                                                                                                    A
   CATG   GTC CCGCCTG GT   CCTAA       TCCCC   TAAGCTT   TTATTTTT       CACAT T ATT G G   T                                                                                                                                    
AAG    --G   A       A  ---     AAACAAA     ---       --T        ATATTTG     - T   C - AAA CTTTACCCTTGGAACTTAAGAAAACCTAAATTTTAGTGTGAAAATCGTGAAAAAATTTGATTTTTTTTTGAACTTTTTGTCTTGATTTTTGATTTTTTTTGACTTTGATTTTTTCTTTTTCTATTTTACGAA

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End