SE3830337

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_8655
  • Solanum tuberosum
  • SE3830337
  • hAT
  • Hat18
  • chr01:64448908-64449521
  • GATGAAAG
  • TAGGGATGGCAATGGGGCGG

Secondary structure and sequence

TSD    TIR
5'



3' 
GATGAAAG                    GACGGA         AGGC            ATTTAAG  - ATGTAAGGCGGTGCGGGTTTAAGGTTGTGTGGGGTGGGTCAGATGCGGGGTGAGTTGAAGTGGATTTTTTTAAAATTAATGTGGGGCAGGGTGGGTTGCGGGTATATGTGATTTTATGTGGATTCAAACTTAATTTTCACTCTTTACATGTTATAAGAGTGATAGAACATTATTTATTAAGATAATTTCATTAAAGCTACTAAAATATTTAAGATAATAAATAAAAATGGCTCAATAAATAATAAT
        TAGGGATGGCAATGGGGCGG      TGTGGGGCG    GGGGCGGGGCGG       GC T                                                                                                                                                                                                                                                      
        ||||||||||||||||||||      |||||||||    ||||||||||||       || |                                                                                                                                                                                                                                                       
        ATCCCTACCGTTACCCCGCC      ACATCCCGC    CCCCGCCTCGCC       CA C                                                                                                                                                                                                                                                      
GAAAGTAG                    ------         ----            -------  A TCGAATTAAGCGTTTTAAAAATTAGGCGGGGCAGGCGGGGTGTATTCTTGAGAAAAGTAAAAGTTGGACAGGGCGGGGCGGGGTGTACTTGAGCAGGGCGTATTAAAAAAATTATAAAAGAAAAAGATGATACGAACTATGATTTTTATTTAAGTAAAAAAGTAATTCAAAATAATTAAATTATCCTATCACTGAATTTTAAAATAAAAAATTTCCAGTTAACCCTTTGTACATTCTTTAACATAA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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