SE3830338

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_8656
  • Solanum tuberosum
  • SE3830338
  • hAT
  • Hat19
  • chr08:1280977-1281113
  • GGATAGAG
  • CTAAGTTGCTCGGACTCTCCAAAAATATTGTCG

Secondary structure and sequence

TSD    TIR
5'



3' 
GGATAGAG   A              C    A  A      CACC    C        C     ATGC
        CTA GTTGCTCGGACTCT CAAA AT TTGTCG    CGTG CGGATCCT CAAAA    
        ||| |||||||||||||| |||| || ||||||    |||| |||||||| |||||    A
        GAT CAACGAGCCTGAGA GTTT TA AGTAGC    GCAC GCCTAGGA GTTTT    
GAGATAGG   A              A    A  C      CCAC    A        A     CATC
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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