SE3820339

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_8657
  • Solanum tuberosum
  • SE3820339
  • Mutator
  • M27
  • chr01:83044928-83045619
  • GTATTTAGA
  • GAGAAAATGATCAAAATGGTCCTTGATGTATTGGTGTTGCTTTATTTTGGTCCTCAATATATTCTAGGTGATTGAAATAGTCCTTCATGTATGACAAAATGTGTTCAATTTAGTCTTTTACCCTAAACTTAACATTTTACCCCCAAAACTGTTAAATATAACGGTGG

Secondary structure and sequence

TSD    TIR
5'



3' 
GTATTTAGA                                  T                                                                                                                 -                   -----GG   A    -  TATTTAGCAGTTTTTGGGGATAAAATGTTAAGTTTAGGGTAAAAGACTAAATTGAACATATTTTGTCATACATGACCATCGTTATATTTAACAGTTTTTGGGGGTAAAATGTTAAGTTTAGGGTAAAAGACTAAATTGAACATATTTTGTCATA
         GAGAAAATGATCAAAATGGTCCTTGATGTATTGG GTTGCTTTATTTTGGTCCTCAATATATTCTAGGTGATTGAAATAGTCCTTCATGTATGACAAAATGTGTTCAATTTAGTCTTTTACCCTAAACTTAACATTTTACCCCCAAAA CTGTTAAATATAACGGTGG       ACC CCGC TA                                                                                                                                                          
         |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||       ||| |||| ||                                                                                                                                                          C
         CTCTTTTACTAGTTTTACCAGGAACTACATAACC CAACGAAATAAAACCAGGAGTTATATAAGATCCACTAACTTTATCAGGAAGTACATACTGTTTTACACAAGTTAAATCAGAAAATGGGATTTGAATTGTAAAATGGGGGTTTT GACAATTTATATTGCTACC       ACT TTTT TA                                                                                                                                                          
AGATTTATG                                  T                                                                                                                 T                   AGTACAT   G    A  CAAGTTAAATCAGAAAATGGGATTTGAATTGTAAAATGGGGGTTTTTGACAATTTATATTGCTACCAGTACATACTGTTTTATACAAGTTAAATCAGAAAATGGGATTTGAATTGTAAAATGGGGGTTTTTGACAATTTATATTGCTACCAGTA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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