SE3830341

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_8659
  • Solanum tuberosum
  • SE3830341
  • hAT
  • Hat24
  • chr07:37071601-37072267
  • GTCACATT
  • TTAGGGGTGTGC

Secondary structure and sequence

TSD    TIR
5'



3' 
GTCACAT      G                          ACC  -----        AAGTGTTATTGGTTTATTGTTATTGAGTTATTGGGTTAACGATTTTTTAATGGTTTTATAAAAAAAATTGGGTTATCGGTTCGGTATTGGTTTTTAATATTGGGTTATTGGGTAAACCGATAACCCATTAAGACTAGTAATTTACTACTTTTACTTGTACATAAATATTATATATTAATCTTAATACCTTAGTAGTTACTATCTTTGTCCTTTAGCCTTCAATTCACACTTCACAATGGCTTTGAGTTCACAATTTCACATTATAAAAAACGTTAAAAT
       TTAGGG TGTGCAAAAATCGAACCGACCGATAA   GA     ACTGATAA                                                                                                                                                                                                                                                                                       
       |||||| ||||||||||||||||||||||||||   ||     ||||||||                                                                                                                                                                                                                                                                                       C
       GATCCC ACACGTAACCAGCCAAGCCAAGCCAA   AA     AATAGCCA                                                                                                                                                                                                                                                                                       
TTACACT      G                          ---  TACAT        AGCCAAATAGCCAAAAACCAAAAATTTATACAATTTGGTTATTGGTTTGGTTATTCTATAAAAAATAGCCAAAACCAGGAATTGCCAAGTTAAAAGCTAAATTGGTTATTCTTTTATAAATATTTTATTTATATACTGAAAAGATTATTTAAACTACGCTTTTGTGTTATTACATTGAAATGTTTACGAGTATTTTTATCTTTGTTATTATTGTTTCTACTTTTCTTGATATGTTCACATTGTGTTTCTCTTTAATTCTCCTTATACCAAGAATGAAAT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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