Plant MITE

SE3830344

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_8662
Solanum tuberosum
SE3830344
hAT
Hat42
chr07:9675796-9676446
AATATAGG
TATAGGCAGGGGCAGAGCTA

Secondary structure and sequence

TSD TIR

5'

3'

AA    GG       A      --CTGTA   GA  ---     TCGACTTAACCCACTGGCTTTTCCGTAGACCCTATATTTGTATTAAAATATGAAGTACAATGTATATATATATTTCTTGCAAACCCATAAGCACACTGAAGCGTTTGACCCAGTGATCACTCTGCACCCAATGAGATCGTTCACCCCCTGCGGAATGTGGGTTCGAATCTCGGTAGGCACACCGTTTTTTGGGATTAATTTCTAAACGTGTGTTTATATAAAAAAAATAAAAAAAATAGAATATCGGTAAGGAAATAGTATTTGTGTCGTAATTAATTTTTTTT
  TATA  CAGGGGC GAGCTA       GCG  AG   GGGGT                                                                                                                                                                                                                                                                                            
  ||||  ||||||| ||||||       |||  ||   |||||                                                                                                                                                                                                                                                                                             
  ATAT  GTCTCCG CTCGGT       TGC  TC   CAAGA                                                                                                                                                                                                                                                                                            
GG    AA       C      CCTAAAG   AG  ACC     TTTAAAAATTTTTCTTGTTACTAGAATTGGATTTCATTGTTAGTAGTTTAATTGCTTGTTTATGTTCAAGTGATTTTTGTTTATTCCTTTTTTTACTTTTCCCTCTCTGTCTTCATGTGTGGTCTCCGGTCTACAACCTATTGTAGTTAATCTAGTTGTTATTTTCAATCTTGGGATTGAAAACCTCTCTTTTTAACTCAATTTGAAAAACTTACACTCATCTTTAGTTATCAGTATATAACATCAAAGTCTCATGCTATGTTTATGATAAAAGGAAAAAAAAT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3830344

AATATAGGCAGGGGCAGAGCTACTGTAGCGGAAGGGGGTTCGACTTAACCCACTGGCTTTTCCGTAGACCCTATATTTGTATTAAAATATGAAGTACAATGTATATATATATTTCTTGCAAACCCATAAGCACACTGAAGCGTTTGACCCAGTGATCACTCTGCACCCAATGAGATCGTTCACCCCCTGCGGAATGTGGGTTCGAATCTCGGTAGGCACACCGTTTTTTGGGATTAATTTCTAAACGTGTGTTTATATAAAAAAAATAAAAAAAATAGAATATCGGTAAGGAAATAGTATTTGTGTCGTAATTAATTTTTTTTTAAAAAAAAGGAAAATAGTATTTGTATCGTACTCTGAAACTACAATATATGACTATTGATTTCTACTCACATTCAAAAAGTTTAACTCAATTTTTCTCTCCAAAAGTTAGGGTTCTAACTTTTATTGTTGATCTAATTGATGTTATCCAACATCTGGCCTCTGGTGTGTACTTCTGTCTCTCCCTTTTCATTTTTTTCCTTATTTGTTTTTAGTGAACTTGTATTTGTTCGTTAATTTGATGATTGTTACTTTAGGTTAAGATCATTGTTCTTTTTAAAAATTTAGAACCCACTGACGTGAAATCCTGGCTCCGCCTCTGAATATAGG

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