Plant MITE

SE3820346

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_8664
Solanum tuberosum
SE3820346
Mutator
M29
chr05:57916698-57917023
TTATAATTA
TTATAATTAGGGAAAATGCATAAGTACCCCCCAGCCTATGCCCAAAATCCCTGAGACACACCTAACCTTTACTAAGGTCCTATTACCCCCCTGAACTTATTTT

Secondary structure and sequence

TSD TIR

5'

3'

        ATT                                                                                C              TTTAAT                                     C   AAAAAATT  CAAC
   TTATA   AGGGAAAATGCATAAGTACCCCCCAGCCTATGCCCAAAATCCCTGAGACACACCTAACCTTTACTAAGGTCCTATTACCC CCTGAACTTATTTT      TAATTTTCTACTCCTTTTCGGCCTACGTGGCACTATC TTG        GT    
   |||||   |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||      ||||||||||||||||||||||||||||||||||||| |||        ||     
   AATAT   TCCCTTTTACGTATTCATGGGGGGTCGGATACGGGTTTTAGGGACTCTGTGTGGATTGGAAATGATTCCAGGATAATGGG GGGCTTGAATAAAA      ATTAAAAGATGGGGAAAAGCCGGATGCACCGTGATAG AAC        CG    
ATT     ---                                                                                A              -TATAT                                     -   ACCCGGGT  CACA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3820346

TTATAATTAGGGAAAATGCATAAGTACCCCCCAGCCTATGCCCAAAATCCCTGAGACACACCTAACCTTTACTAAGGTCCTATTACCCCCCTGAACTTATTTTTTTAATTAATTTTCTACTCCTTTTCGGCCTACGTGGCACTATCCTTGAAAAAATTGTCAACACACGCTGGGCCCACAAGATAGTGCCACGTAGGCCGAAAAGGGGTAGAAAATTATATATAAAATAAGTTCGGGAGGGTAATAGGACCTTAGTAAAGGTTAGGTGTGTCTCAGGGATTTTGGGCATAGGCTGGGGGGTACTTATGCATTTTCCCTTATAATTA

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