SE3830350

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_8668
  • Solanum tuberosum
  • SE3830350
  • hAT
  • Hat41
  • PGSC0003DMB000000910:43400-44077
  • GTCGCAGA
  • GCAGACAGGGGCGGACCCACG

Secondary structure and sequence

TSD    TIR
5'



3'
GTC  A   A  -          C --TGTT  CC         ------------------ACCCGAAC    TCAA  --------       A    GTATATATAAGGTGAATTTTTTGGATTTATGTGGATATATATATTTTGAACCCCCTTAATGACAAGGTGAAGGAGATAGCCCAGCGGCAGCTCCCTTCAATATTAAGCCTGACGTCCAGGGATCGAATCCCTGGGTTAGCGTTATTTTTTAGTTTTTTTCTTTCAGTTTTTTTTTTTTTTTTTAAGTTCCAGTTCCGATTTTCATGTGTTTTTTAGTTTTTTTTTTTAATAAAAAGTGCTAAAATGTGGTGTTAAA
   GC GAC GG GGCGGACCCA G      GT  AGGGGGTTC                          CCAC    TA        AAAAATT CACT                                                                                                                                                                                                                                                                
   || ||| || |||||||||| |      ||  |||||||||                          ||||    ||        ||||||| ||||                                                                                                                                                                                                                                                                C
   CG CTG TC CCGCCTGGGT C      CA  TCCCCCAAG                          ATTC    GG        TTTTTAA GTTC                                                                                                                                                                                                                                                                
AGA  -   G  A          C TAAAAT  AA         CTTTTTATTTTCATATTTGTACATTT    ----  TTGTTTTT       -    CTTCATCATCATATATCAAATATGCATGTTTTTCAATCAAAGCAATGTTCTTTAGGCTTTGATTGTATTCACTAATGTCACTTTGTTTTTCAATCGGGAAATTTTATACAGTTTAGTTGTTATCTTATAATACCCTCTACTAAAATTATAAACTCAAAACTCACAACCCTTCTTGTTCTTTCACTAAATCCCTAAACCTTTCACTTTTTCAATAATCGAAAATCCTTACCCTCATACCCTGGGAACTTAAAAAACC

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End