SE3850351

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_8669
  • Solanum tuberosum
  • SE3850351
  • PIF/harbinger
  • To7
  • chr04:49516181-49516417
  • TAA
  • AGGGGTCGTTTGGT

Secondary structure and sequence

TSD    TIR
5'



3' 
TA      C       ---    - ACT GTTATCCTAGGATTAATTATCCTGAAATTAACTATCCTGGGATAACTTATCCCACCCTGTATATGGGATAACTTATCCCATCACTAAGGTAAA
  AGGGGT GTTTGGT   TGGG A   A                                                                                             
  |||||| |||||||   |||| |   |                                                                                             A
  TTCCCA CAAACCG   TCCT A   T                                                                                             
 A      A       CAT    T --- TCTTATATATCAGGACCCTATTTTTTTTACCAGGACCCTATTTGTGAATTACAGAACAAACCAACTGTACAAATTCTATTGAATAGGGTGGTA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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