SE3850354

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_8672
  • Solanum tuberosum
  • SE3850354
  • PIF/harbinger
  • To6
  • chr09:39974187-39974599
  • TAA
  • TAAGGGGTCGTTTGGTTTGAA

Secondary structure and sequence

TSD    TIR
5'



3' 
             G  T    T  AAGTTATGATGGGATAAATTATGATGGGATTAGTTATGATGGGATAAGTTATGATGGGATTTATTTTTTATTGAGTGTTTGGTTTGTTGTATTCAAAATAATAAATTTTAAGAACAATTTATTTGTTTACAAAAATGCCCTTCATGAATGTAAAAAGAGATGTAACAAAAGGGTTGAAAGAGA
TAAGGGGTCGTTT GT TGAA TC                                                                                                                                                                                       
||||||||||||| || |||| ||                                                                                                                                                                                        
ATTCCCCAGCAAA CA ACTT CC                                                                                                                                                                                       
             G  C    -  TATTATGGTTTATCAGTACCCTAATTTAATATCATAGTGAATTAAACAACAAACCAACCGTTCAGGCCCTATTGAATAGGGCCCTAATTATTAATCATGGCCCTATTCAATAGGGAGGGGAACCCACCATATCATTGGGGCCGTATTGAATAGGGCCCTATTTTATTCATTTACTGTTTTTAC
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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