SE3830355

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_8673
  • Solanum tuberosum
  • SE3830355
  • hAT
  • Hat19
  • chr04:12428163-12428298
  • GTTGAGAC
  • GTTGAGACTAAGTTGCTCGGACTCTCCAAAAATGTTGCCG

Secondary structure and sequence

TSD    TIR
5'



3' 
   GA    -AA              C           C  CACC                      C
GTT  GACT   GTTGCTCGGACTCT CAAAAATGTTG CG    CGTGTCGGATCCTTCAAAAATA 
|||  ||||   |||||||||||||| ||||||||||| ||    |||||||||||||||||||||| A
CAG  TTGG   CAACGAGCCTGAGA GTTTTTACAGC GC    GCACAGTCTAGGAGGTTTTTAT 
   AG    ATA              A           T  CCAC                      C
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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