SE3830356

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_8674
  • Solanum tuberosum
  • SE3830356
  • hAT
  • Hat37
  • chr02:53022482-53022937
  • CTTGGGTG
  • GCAGGGGCGGACCCACGTTGGTTCCAGGGGTTC

Secondary structure and sequence

TSD    TIR
5'



3' 
CTTGGGT    G          C ---TTG    CA       --------ACC   ACCCCCTCGACAAAAAATTACACTGTATATATAAGGTAATTTTCTGTATTTATGTGTATATATATATTTTGAACCCCCTCAATGACAAGGAGAAAGAGATAGTCCAGTGGCAAGTTCCTTGAAAATTAAGCCTTACGTCAAGGGTTCGAATCCCTTCATTAGCGTTTTATTTTTTT
       GCAG GGCGGACCCA G      GTTC  GGGGTTC           CGA                                                                                                                                                                                
       |||| |||||||||| |      ||||  |||||||           |||                                                                                                                                                                                T
       CGTC CCGCCTGGGT C      CAAG  CCCCAAG           CAT                                                                                                                                                                                
GTGGGTT    A          C TAAAAA    TC       CTTTTTATTTT   ATTTGCACATATATATTCGGTTGTTCTATTTTAGAGTTCTTTCATCATCATAAATCAAAATCACCTCCTGTGAACTTAAAAAAACCCAAATTTTGGTGTGAAAATCGTACAAAATATTTTATTTTTTGTTTTTTTTTCCCTTGACTTTGATTTTTTTTTTTGACTTTGACTTTTTC
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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