SE3830357

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_8675
  • Solanum tuberosum
  • SE3830357
  • hAT
  • Hat26
  • chr03:47824844-47825610
  • ACTGTCAA
  • TAGAGCCGTCAAAATGGGTTTAGCCCATAGGGCCGGCC

Secondary structure and sequence

TSD    TIR
5'



3' 
ACTGTCAAT      C       T     ----      -ATA     --    ------   --------        GTTATTGGGGTAGGGTTGAGATAAGATTTTTCAAGCCCATTTAAAACTAGGGCTTATAAGTTCGACCCATATAAACCCTTGGCCCTTGAGGCTTGATCGGGGCTGGGACGGGGTCGGCCCATGGGCCAAAAAGTTTTATTTAAGAGTAATTTACAATAATCTCACTAATATATAATCTAATTATTTGAATACACGCTATGTTGTAATATTATAAATCTTCGTACCTAGATAGTATCTCGAAATATATGGACTCAAAATTGGGTTAATTTGTTCTAGATACACTCTATCCAAGTAGATTTGCATGTATCTAGGATA
         TAGAGC GTCAAAA GGGTT    TAGCCC    GGGCC  GGCC      CAA        CCCTACCC                                                                                                                                                                                                                                                                                                                           
         |||||| ||||||| |||||    ||||||    |||||  ||||      |||        ||||||||                                                                                                                                                                                                                                                                                                                            
         ATCTCG CAGTTTT CCCAG    GTCGGG    CCCGG  TCGG      CGG        ACTTCCCG                                                                                                                                                                                                                                                                                                                           
ATAACTCTC      A       T     TAGG      GTGG     GT    AGCTCA   TTCCTTAA        ATCCCACCCGACCGGGAAGTAAACCATCCCGAACTTTTACGAGTTGGGTTGGGTTGGGATCTTCCTGGCTCCCGATCCCGCCCGATCGGGAAGACAAAAAGAAAAATTAAAAAAAAAGAAAAGTTTGAATATTAAGATATTGTAGTTTTTTACTTTTCTAAAAGTTTAGTTTATACTGTTTGTTACTACAACAAAAGTTATTATGATTGTTTTTAGGTCACATTAATAGTACATAGAGCGTATGACCTATACGCTCACTCTATTCTCTCACTGTTCGTTCTATCCTCCCTCGGCTCCCGCGCTCTAAACATATAC
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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