SE3820361

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_8679
  • Solanum tuberosum
  • SE3820361
  • Mutator
  • M8
  • chr01:49104536-49104859
  • TATATTAAT
  • GGCATAATACATAAATATGCCATTTAACTTTGCCTCATTTTATATTTATGTCCTCCAACTTTGAGTGTGCACAAGTAGACACTTAAACTCGTATAAAATTGAACAAATAAACAC

Secondary structure and sequence

TSD    TIR
5'



3' 
TATATTAAT                   C          T C  C                           A                      A  C       A        A  A    TCACA             CC      GCAATTT     CTA
         GGCATAATACATAAATATG CATTTAACTT G CT ATTTTATATTTATGTCCTCCAACTTTG GTGTGCACAAGTAGACACTTAA CT GTATAAA TTGAACAA TA ACAC     TCCTATGTGGCAT  TACATG       GCATC   
         ||||||||||||||||||| |||||||||| | || ||||||||||||||||||||||||||| |||||||||||||||||||||| || ||||||| |||||||| || ||||     |||||||||||||  ||||||       |||||    
         CCGTATTATGTATTTATAC GTAAATTGAA C GA TAAAGTGTAAATATGGGAGGTTGAAAC CACACGTGTTTATCTGTGAATT GA CATATTT AACTTGTT AT TGTG     AGGATACACCGTA  ATGTGT       TGTGG   
 AATTATAT                   A          C A  A                           C                      C  A       C        C  C    TACTC             AT      ---ATCC     TGC
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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