SE3810362

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_8680
  • Solanum tuberosum
  • SE3810362
  • Tc1/Mariner
  • St4
  • chr06:48104251-48104513
  • TA
  • TACTCCCTCCGTCCACTTTTATTTGTCAT

Secondary structure and sequence

TSD    TIR
5'



3' 
                 T   T       GTTGC       AAA       -   ACTTATTTTCAAAGTTAAATTAGATTACATTAATTCAATTTTTTAAACAAAAAATTTAGATATTCAAAAATTATACGAAAA
TACTCCCTCCGTCCACT TTA TTGTCAT     GCTTTTC   AGTCAAT TTG                                                                                 
||||||||||||||||| ||| |||||||     |||||||   ||||||| |||                                                                                  
ATGAGGGAGGCAGGTGA AAT AATAGTA     TGAAAGG   TAAAAAT TCA                                                                                 
                 T   T       -----       ---       C   ATTTGAAATTTTTGAAACTGATTGTAAAATCCTATATAAATTAGTAGTATAACTATACATTTTTTTACGTTACATATCATG
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

Copyright ©.   Contact us: contact@pmite.com   京ICP备2022028499号-3