SE3820363

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_8681
  • Solanum tuberosum
  • SE3820363
  • Mutator
  • M8
  • PGSC0003DMB000000703:54238-54563
  • ATATATATA
  • ATATATAGACATAATACATGAATATACCTTTTAACTTGGCTCTAGCTAGCATTTATAACCTTTAATTTTGCGTGTATACAAGTAGACACTTAAACTTGTATAAAATTGAATAAGCAGACACA

Secondary structure and sequence

TSD    TIR
5'



3'
 AT      A A                AC T          -   T    AGC       A            C    A          C           T               C   C   -CACA  TTAAATGACATAATACACGTAGGACACCATAT
   ATATAT G CATAATACATGAATAT  C TTTAACTTGG CTC AGCT   ATTTATA CCTTTAATTTTG GTGT TACAAGTAGA ACTTAAACTTG ATAAAATTGAATAAG AGA ACA     TC                                
   |||||| | ||||||||||||||||  | |||||||||| ||| ||||   ||||||| |||||||||||| |||| |||||||||| ||||||||||| ||||||||||||||| ||| |||     ||                                A
   TATATA C GTATTATGTATTTATA  G AAATTGAACT GAG TTGA   TAGATAT GGAGATTAAAAC CACA GTGTTCATCT TGAATTTGAAC TATTTTAACTTGTTT TCT TGT     GG                                
ATT      C -                CA T          A   -    ATA       G            C    C          A           T               A   A   AAACA  ATACACCGCAGAATGTACTGTTAAAACACAGA

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End