Plant MITE

SE3820365

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_8683
Solanum tuberosum
SE3820365
Mutator
M8
chr06:34665816-34666108
TAATTTAGG
TAATTTAGG

Secondary structure and sequence

TSD TIR

5'

3'

     T     GGCAT              -  AC         A           T     C  ACC        G                 ---------------ACAT        TGCATAATAAACATAGGTTGTCACGTACTATACAAA
  TAA TTAGG     AATACATAAATATG TC  TTAATTTGG TTCAGCTGGCA CTATG CC   AACTTTGG TGTGCACAAGTAGACAC                   GTCTTATG                                    
  ||| |||||     |||||||||||||| ||  ||||||||| ||||||||||| ||||| ||   |||||||| |||||||||||||||||                   ||||||||                                     
  ATT AATCC     TTATGTATTTGTAC AG  AATTGAACT GGGTCGACCGT GATAC GG   TTGAAACT ACACGTGTTCATCTGTG                   TTGTTTAT                                    
GG   T     --ATT              T  -A         G           T     T  AAA        G                 AATTTGAACATATTTTAAC        TTGTGTAAGCAGTATATACCGTAGGATGCACCGTTA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3820365

TAATTTAGGGGCATAATACATAAATATGTCACTTAATTTGGATTCAGCTGGCATCTATGCCCACCAACTTTGGGTGTGCACAAGTAGACACACATGTCTTATGTGCATAATAAACATAGGTTGTCACGTACTATACAAAATTGCCACGTAGGATGCCATATATGACGAATGTGTTTATTTGTTCAATTTTATACAAGTTTAAGTGTCTACTTGTGCACAGTCAAAGTTAAAGGTCATAGTTGCCAGCTGGGGTCAAGTTAAAGATCATGTTTATGTATTTTACCTAATTTAGG

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