SE3850366

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_8684
  • Solanum tuberosum
  • SE3850366
  • PIF/harbinger
  • To7
  • chr08:39125510-39125790
  • TAA
  • AATAGTTTGGTGT

Secondary structure and sequence

TSD    TIR
5'



3' 
     TAAGG      T      GAAGTATAA   ATAATAATCC     -   AATGCAGAATTATTATCCTGCATTTGGTTGGAGGTATTAGGTAGTCCTTGGATTATTTATTTATCCCACCATTTATACCATAGTGATGGAAT
          AATAGT TGGTGT         GGT          CGGGA TAA                                                                                            
          |||||| ||||||         |||          ||||| |||                                                                                             
          TTATCA ATCACG         CCG          TGGGG TCA                                                                                            
CTTGACGATA      T      -----AAGA   AGAGAATAAG     T   AGACGGTGATTCCCCAACAAACCAACCCTTGTTCAATAGCTCCCTAATTAATAAGACACTATTCAATAAGGTGGTACATATACTCTATTGAA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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