SE3830369

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_8687
  • Solanum tuberosum
  • SE3830369
  • hAT
  • Hat24
  • chr12:45183111-45183860
  • GACAAGAC
  • CTAGGGGTGTG

Secondary structure and sequence

TSD    TIR
5'



3' 
GACAAGA           --CAAA   -     -- GCC   TAAACCGAATTGAAAAAAGTGTTACTGACTTACTGGTTTATTGTTATTGGGTTATTAGGTTATTGGGTTAACGATTATTTAATGGTTTTATAAAAAAAATTATTGGGTTATCGGTTTGATATGGTTTTTTAATATTGGGTTATTGGGTTAACCGATAACCCATTAAGAATATAATTATAATTTACTATTTAAATTTTTAGTCATACATAAATATCAAACAAACAATAATAGTATAATCACTATATTAGACTATAATTATAAGGACCCTACACAATTAACATTACTTAATTAACTTGCTCTCTGCATTTACCCTTTAGGTTTAGTATTACTTTAGTCT
       CTAGGGGTGTG      AAC CAAAC  C   CGA                                                                                                                                                                                                                                                                                                                                                 
       |||||||||||      ||| |||||  |   |||                                                                                                                                                                                                                                                                                                                                                  
       GATCCCCACAC      AGC AAGTC  A   TAG                                                                                                                                                                                                                                                                                                                                                 
CAGAACA           ATAGCC   C     AA ---   CCAAAAATTTATACGATTTAGCTATTGGTTTGGTTATTCTATAAATAATACCCAAAAGCCAAATAACCAAAACCAGAAATTACCAAGCCAAAAATCAAATTGGTTATTCTTTTACGAAAGTTTTATTTATATACTGAACAGGTTATTAAATTACGCTTTGTTTTTTTCTATCTTTAGATTAACGATTAACTCACGTTTTTAAGAACAATCACATCATTTTCATATCGTTTATGAGTGTTAAGTGTTGGGCTCAGTAACGGATTGGGAACGGTAGTAGCAACGTTTGGGATCTGCAGTAGCAAGAATCAAGAAATCCGAAAACTGCAACACTTGGATT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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