SE3810371

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_8689
  • Solanum tuberosum
  • SE3810371
  • Tc1/Mariner
  • St9
  • chr05:2701334-2701600
  • TA
  • TACTCCCTCTATCCCATATTAGTTGATC

Secondary structure and sequence

TSD    TIR
5'



3' 
          A                    --     TTTTACACGC --  TTAAGAAATCATAAATAAGAAGATAAATTTACTAATTCACCCCTTACAAAACTTCTTGGAAATTTTACAAATAAATGTGAACGCTTT
TACTCCCTCT TCCCATATTAGTTGATCTTT  TTCCT          A  TA                                                                                       
|||||||||| ||||||||||||||||||||  |||||          |  ||                                                                                        
ATGAGGGAGG AGGGTATAATCAACTAGTAG  TGATT          T  TC                                                                                       
          C                    AA     ---------T TA  AACAGAGTATAATCAACTAGTGGAATGATTTAGTCATTTCGTAATTAATTAAAAAAGGATATAATGGGAACATTAATTAAGAAAAAC
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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