SE3830372

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_8690
  • Solanum tuberosum
  • SE3830372
  • hAT
  • Hat36
  • chr06:44852071-44852869
  • GTGGTAGA
  • TGGTAGATAGAGCTGTCAAAATGGATTTGGC

Secondary structure and sequence

TSD    TIR
5'



3'
 G  G  GA                 AT     -  GCTAGGTCGGTCCAACCCAATTCTTGAATTAAATGGGATTGGGCTCAATTTTTTCAGCCTATTTAGGTATGAGGCTTTTTAGCCCAGCCTCATTTGGCCCGCTGGCCTCGTAGGGCCAACCCACAAGCCTTAGAGGCCAGCCCGCGGGCTATGAATTCTAAAAATATTTATTATATATATTTTAAGTAGTGTTTTACTTGTTAAGATTTTGTCAATAAATATTTTTAAAGTATCAATATAAAATCAAGACTATATTTTTTACTATATCTCTTACACTTTAGGGTCATTAGTCCACTAAATTTTCTTATTAGCTCAAGTCCATTACTCCATCATAACTATGAATCTTTGACCTTTTTCACATTTGT
  TG TA  TAGAGCTGTCAAAATGG  TTGGC CC                                                                                                                                                                                                                                                                                                                                                                             
  || ||  |||||||||||||||||  ||||| ||                                                                                                                                                                                                                                                                                                                                                                             T
  AT GT  ATCTCGACAGTTTTACC  GACTG GT                                                                                                                                                                                                                                                                                                                                                                             
AG  G  -G                 -C     A  TGGGTTGGGATTGCCCGCTCTCTCAAACCAACCCTGCCCGACTGGGAAAATTAATTTCCCGGATATTTTATTGTCGGGTTGGGTCAGGATTCGCCCGGTGTTTAACCCTGCCCAACCGGGAAGTTGGTTTTTTACCTGTTGTAAAAGGAGAATCTTTTCTATGATTGCAACTACAGGCTACTTGTGCTGTAGTTATGTATGTATTTAAGTAAGTACTTAATGTGTATGAAGTCACTTATAAATGTTTTGTTTATGTATTATCGGTTCTATGTTGTAAGTATTCTAAGTAGGCTCGTTTTTTTGTAATGTACTAGTGATAAAAGTATTTGTTCTGTTATTTTCTCTTAACTTTTTAATCCGTATTT

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End