SE3820374

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_8692
  • Solanum tuberosum
  • SE3820374
  • Mutator
  • M11
  • chr12:60862574-60862899
  • TATTTTTTT
  • GGGA

Secondary structure and sequence

TSD    TIR
5'



3' 
TATTTTTTT    TTAG C                       C                              T                 C                          A        - T           CAC    --TGA    A   AATTG
         GGGA    G ACAAGTACCCTCCTAGACTATGA CAAAATCCCAGAGACACACCTTAACTAAAC AAGGTCCTATTATCCCC TGAACTTATTTTTTTTGTAATTTTGT CACCTTTT G CTTACGTGGCA   TCCG     CTCC CAT     
         ||||    | ||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||| |||||||| | |||||||||||   ||||     |||| |||     A
         CCCT    C TGTTCATGGGGGGATCTGATACT GTTTTAGGGTCTCTGTGTGGAATTGATTTG TTCCAGGATAATGGGGG ACTTGGGTAAAAAAAACATTAAAACA GTGGAAAA C GAATGCACCGT   AGGT     GAGG GTG     
TTTTTTTAT    TTTA A                       A                              C                 A                          C        A C           ---    TTATA    -   CGCGG
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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