Plant MITE

SE3840375

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_8693
Solanum tuberosum
SE3840375
CACTA
Ca1
chr04:30728510-30728734
ATT
TCACTACAACAAAAA

Secondary structure and sequence

TSD TIR

5'

3'

AT        A      CATA             A   AT   -  TA   AAATA   -- TAAAA   TTACC   A   GTTAATTGTCATTGGATCCAATGTCACTAAAGTCTT
  TCACTACA CAAAAA    TTTTAGCGGTAAT AAT  ACA CA  AAC     GTG  T     CCT     GGC TTA                                    
  |||||||| ||||||    ||||||||||||| |||  ||| ||  |||     |||  |     |||     ||| |||                                     
  AGTGATGT GTTTTT    GAAATCGCCGTTA TTA  TGT GT  TTG     CTT  G     ATT     ACA TGA                                    
TT        A      ACTA             A   AT   T  TA   ACTTA   TT -----   --TAT   -   AAATCATCGTTAATCTTGAGAAACATATACAGGGGT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3840375

ATTCACTACAACAAAAACATATTTTAGCGGTAATAAATATACACATAAACAAATAGTGTTAAAACCTTTACCGGCATTAGTTAATTGTCATTGGATCCAATGTCACTAAAGTCTTTGGGGACATATACAAAGAGTTCTAATTGCTACTAAAAGTACATATTTAGTTTTCATTCAGTTATTGTTGTTAATTAATTGCCGCTAAAGATCATTTTTGATGTAGTGATT

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