SE3850377

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_8695
  • Solanum tuberosum
  • SE3850377
  • PIF/harbinger
  • To5
  • chr06:21152384-21152852
  • TTA
  • AGGGGTCGTTTGGTAGAGTGTAT

Secondary structure and sequence

TSD    TIR
5'



3'
TT                       TAGC          -------AT     ---  TAT         TAGTCCCTTGTTTGGTGCATTTTTTACATGCTATGTATATCTAATGCTTGCATTAGTTATACCATTAGTTATACGCTCTATTGTGTATTGAGGAGTGTATTACTAATACCATGGATTTCTAGGTATTAGTAATGCAAAGGATTTAATACATACATTAATATGGTTAAAAACC
  AGGGGTCGTTTGGTAGAGTGTAT    AAAATAATGC         GCATT   AA   ATGTATTAG                                                                                                                                                                            
  |||||||||||||||||||||||    ||||||||||         |||||   ||   |||||||||                                                                                                                                                                            C
  TCCCCAGCAAACCATCTCATATA    TTTTATTATG         ACATA   AT   TACGAACGT                                                                                                                                                                            
AT                       ---T          GGTTATCTC     ATT  ---         AATCATTACGTACATAATCAATATGAACATAATCAATACGTATCTAATAAAGAATACGTAACCAACCAAACCACATAATTTTTATCATACGTAACATACTTTTATCAATAAATGTTTTCATAGGAAGTGTTAATACCACCTTTTCTACATTTTCATGAAAAGTCCCCACTAA

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End