SE3810378

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_8696
  • Solanum tuberosum
  • SE3810378
  • Tc1/Mariner
  • St1
  • chr01:3485625-3485889
  • TA
  • TACTCCCTCTGTCCCTAATTACTTGTCCACTTTT

Secondary structure and sequence

TSD    TIR
5'



3' 
                                  --CCTTTTA      TCCCTAATTACTTGTCCATTTTGACAAATCAAGAAAGGACAAAAAAATTTTACCTATTATACCCTCAATTAAATGACTAATTAC
TACTCCCTCTGTCCCTAATTACTTGTCCACTTTT         TAGTTG                                                                                    
||||||||||||||||||||||||||||||||||         ||||||                                                                                    T
ATGAGGGAGACAGGGATTAATGAACAGGTGAAAA         GTGGAT                                                                                    
                                  CTTAACTGT      AATTCTTTAGTTAATTACTGTATCACTCAAATGGTAAAATAGGGATAATTAATACTTCACCTACTTTTCAAGACGTAAAAAGTT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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