Plant MITE

SE3820383

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_8701
Solanum tuberosum
SE3820383
Mutator
M41
chr03:21020331-21020678
CGTCCATAC
GAGTCTGAAATCTAAATAAGCCACAAAAAGATAAAAGTGATCAAAATATGTCATTATTCTAGTAAGTAACTAAAATAGGCATAGTGGAAGAAAAAATTTCGTTTTATGCAATATTTCAAACGTTTTCCATTAGTCTT

Secondary structure and sequence

TSD TIR

5'

3'

CGTCCATAC                                                T                               A                             A                 A        ---C   -  TACAAAGTGTAAAAAATAGT
         GAGTCTGAAATCTAAATAAGCCACAAAAAGATAAAAGTGATCAAAATA GTCATTATTCTAGTAAGTAACTAAAATAGGC TAGTGGAAGAAAAAATTTCGTTTTATGCA TATTTCAAACGTTTTCC TTAGTCTT    CAC TT                    
         |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||    ||| ||                     
         CTCAGGCTTTGGATTTATTCGGTGTTTTTTTATTTTCACTAGTTTTAT CAGTGATAAGATCATTCATTGATTTTATCTG ATCACCTTCTTTTTTAAGGTAAAATACGT ATAAGGTTTGCAAAAGG AATCAGAG    GCA AT                    
CATACCTGC                                                T                               A                             A                 C        TATT   C  ATAAAAATTATATATTGCCT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3820383

CGTCCATACGAGTCTGAAATCTAAATAAGCCACAAAAAGATAAAAGTGATCAAAATATGTCATTATTCTAGTAAGTAACTAAAATAGGCATAGTGGAAGAAAAAATTTCGTTTTATGCAATATTTCAAACGTTTTCCATTAGTCTTCCACTTTACAAAGTGTAAAAAATAGTTCCGTTATATATTAAAAATATACACGTTATGAGACTAACGGAAAACGTTTGGAATAATGCATAAAATGGAATTTTTTCTTCCACTAAGTCTATTTTAGTTACTTACTAGAATAGTGACTTATTTTGATCACTTTTATTTTTTTGTGGCTTATTTAGGTTTCGGACTCCGTCCATAC

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