SE3830387

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_8705
  • Solanum tuberosum
  • SE3830387
  • hAT
  • Hat50
  • chr06:1396259-1396708
  • GTCAGAGA
  • TCAGAGATAGGGGTGGC

Secondary structure and sequence

TSD    TIR
5'



3' 
 G  A  GA          AAAATCAAGTTCAACT  C                 ATTTAGGTTTGGGTTGGTTATTGACTCGTCCATTTGTTAGCTCAATCCATTTCAATACAACCCATTAAAAATTGGGTTGATATGTAACCTAAATTGATTTTTAAAAAATCTTGTCAAAGTATTATTAAAAAACTTTTTTTTTGATTTTATATATTATATATAGTTATAATAAAGAAAAA
  TC GA  TAGGGGTGGC                CG GCAATCCGATCCAACCT                                                                                                                                                                                   
  || ||  ||||||||||                || |||||||||||||||||                                                                                                                                                                                   A
  AG CT  ATCCCCACTG                TT AACTCGCCTAACCCAAT                                                                                                                                                                                   
AG  A  -G          ----------------  -                 TTAAACCCACCCAGTTTTACCCAGTTCTGTTATTTACCTAGTTCTGGGTTGGGTTGGGTTTAAACAAACCTAGTTTTGCCCAATCATTGTCCAGTATTGGGTTGGGCGGGTTAAAAATGATTCAAAATTATTGAAATAAACAATCATAAAATATTCGAAAATCATAGATTATTTTAATA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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