Plant MITE

SE3850389

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_8707
Solanum tuberosum
SE3850389
PIF/harbinger
To7
chr03:37330251-37330472
TTA
AGGGGTCGT

Secondary structure and sequence

TSD TIR

5'

3'

TT    G    -------------------------------------------------------T    T GGAACTAGTTATCCCAGGATTAACTATCCTTTATCCTGGGATAACCTATCCCACCATGTATATGGG
  AGGG TCGT                                                        TGGT G                                                                  
  |||| ||||                                                        |||| |                                                                   
  TCCC AGCA                                                        TACA G                                                                  
AT    G    CTCCCTATTCGTATTTATCAGAACCCTATTTTTTTATCAGAACCTTATTTTAAATC    - AACAAACCAACTGTACAAACCCTATTGAATAGGGTGGTAAATATCGTATCACTACCCTATTCAATA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3850389

TTAGGGGTCGTTTGGTTGGGAACTAGTTATCCCAGGATTAACTATCCTTTATCCTGGGATAACCTATCCCACCATGTATATGGGATAACTTATCCCATCACTATGCTATAAATGGTGGGATAAGTTATCCCAAACATGTCAACCAAACAAGACATCTAAATTTTATTCCAAGACTATTTTTTTATCCCAAGACTATTTATGCTTATCCCTCACGAGCCCTTA

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