SE3810390

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_8708
  • Solanum tuberosum
  • SE3810390
  • Tc1/Mariner
  • St3
  • chr05:5241360-5241602
  • TA
  • TACTCC

Secondary structure and sequence

TSD    TIR
5'



3' 
      ATTTAT    T    ATTGTCCACTATACTATTTTGAGATGTCCAACAATACTTGTCCATTTTATGAAATCAATGGACAACTTTACACTTAATTATAGTCATTTCTCTATTACATTT
TACTCC      TCAA AATA                                                                                                      
||||||      |||| ||||                                                                                                      T
ATGAGG      ACAG GTTG                                                                                                      
      ---GAA    -    TTATGAACAGGTAATAACTGAAACGTGTGAAAAATTCTTTGATATTTATCTTCCCATTAAAATGATATAGTGGGAAACTTATATTATTTATGTCATATAACT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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