SE3850392

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_8710
  • Solanum tuberosum
  • SE3850392
  • PIF/harbinger
  • To11
  • chr09:52689040-52689257
  • TAA
  • TAAGAGGGTGTTTGGATTGACTTTTTAAAAGT

Secondary structure and sequence

TSD    TIR
5'



3' 
                   A   T  AA    ----------AACTT    ------          ATAAGTTGGGAATACCCAACTTTTGGCTTTTAGCTTATTTTTATACTTTT
TAAGAGGGTGTTTGGATTG CTT TT  AAGT               ATAA      GCTAAAAGCC                                                  
||||||||||||||||||| ||| ||  ||||               ||||      ||||||||||                                                   
ATTTTCTCACAAACCTAAC GAA AG  TTCA               CGAG      ATAAAAAACG                                                  
                   C   C  CC    CAAAAATCGAAAGTT    GAAAAG          CCACAAACCTCTTCTGTTTTTTATAAAAATTCGTGAATGAAAATCTGGTT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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