Plant MITE

SE3810394

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_8712
Solanum tuberosum
SE3810394
Tc1/Mariner
St15
chr03:6883383-6883650
TA
TACTCCCTCTGTCCAACAATAGTTTGTTCATTATTGACT

Secondary structure and sequence

TSD TIR

5'

3'

        C     A         T         TG   TGACACA     TAAGAAACAATAAATAATAGGGGCAATATTACTATATTATCCTTTGACTTTATTAAATTTAATAGTTTGAAAAATGTGTTAGATG
TACTCCCT TGTCC ACAATAGTT GTTCATTAT  ACT       CCCCT                                                                                     
|||||||| ||||| ||||||||| |||||||||  |||       |||||                                                                                      
ATGAGGGA ACAGG TGTTATCAA CAAGTGATA  TGA       TTAAC                                                                                     
        A     C         -         --   -TTTTAA     AGGTTGTTTTAAACAGGTTAAATTTTTTAGTTCTCTATTAAATGTAAAACACAGATAAAATGGGAATGATAATTTATAATAAAAA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3810394

TACTCCCTCTGTCCAACAATAGTTTGTTCATTATTGACTTGACACACCCCTTAAGAAACAATAAATAATAGGGGCAATATTACTATATTATCCTTTGACTTTATTAAATTTAATAGTTTGAAAAATGTGTTAGATGAAAAATAATATTTAATAGTAAGGGTAAAATAGACACAAAATGTAAATTATCTCTTGATTTTTTAAATTGGACAAATTTTGTTGGACAATTAATTTTAGTATAGTGAACAACTATTGTCGGACAAAGGGAGTA

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