Plant MITE

SE3830396

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_8714
Solanum tuberosum
SE3830396
hAT
Hat13
chr09:24158571-24158773
CTTCCAAT
CAGTGGC

Secondary structure and sequence

TSD TIR

5'

3'

CTTCCAAT   T   AAAACCAAGATTAA     ---  -      TAAATTTCG      --  C   AATCAATGTTGTTAGGGGTTCACAATTTAATATACATATATATTTA
        CAG GGC              GAGTT   TG GGGTTC         TTAATA  AC GTT                                              
        ||| |||              |||||   || ||||||         ||||||  || |||                                               
        GTC CCG              CTCGA   AC CCCAAG         CCCAAG  TG CTT                                              
TAACCTTC   T   -------------C     TCC  T      -------TA      CC  -   GAGTCATCGAAAAAACATCTGAGATATAAACATGATTTTTTAAGTA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3830396

CTTCCAATCAGTGGCAAAACCAAGATTAAGAGTTTGGGGTTCTAAATTTCGTTAATAACCGTTAATCAATGTTGTTAGGGGTTCACAATTTAATATACATATATATTTAATGAATTTTTTAGTACAAATATAGAGTCTACAAAAAAGCTACTGAGTTCGTCCGAACCCATGAACCCTCACCTAGCTCCGCCTCTGCTTCCAAT

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