Plant MITE

SE3810400

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_8718
Solanum tuberosum
SE3810400
Tc1/Mariner
St10
chr01:85411427-85411766
TA
TACTCCCTCCGTCCCATTTTATATGT

Secondary structure and sequence

TSD TIR

5'

3'

                          ----  C    TTACT  ----- C     C  ----    ----------------      T ---   CTTTACCCTTCTACCCTTATTTAATTTTTTTGGAACTCAAGTTTTCAATCAATGAATATGAATTAATTTATTTTGATTAATTAATTTAACCAA
TACTCCCTCCGTCCCATTTTATATGT    CA ATTT     TT     G ACTTG GT    TAAG                AAATTA G   TAA                                                                                             
||||||||||||||||||||||||||    || ||||     ||     | ||||| ||    ||||                |||||| |   |||                                                                                             T
ATGAGGGAGGCAGGGTAAAATATACA    GG AAAG     AT     T CAACC AG    TATG                AGTTAC G   TTA                                                                                             
                          ATAG  -    -----  ATTTA -     -  GTAT    AACAGTAAAGTATTTT      - TAT   ATCGTATAACAAGGAAAAAATGGGAACACTTAATAATCGTAACTTTTGTATGTAAACTGGTTGAATCTTTTCAATTCATTTACTAAGTACAAG

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3810400

TACTCCCTCCGTCCCATTTTATATGTCACATTTTTACTTTGCACTTGCGTTAAGAAATTATGTAACTTTACCCTTCTACCCTTATTTAATTTTTTTGGAACTCAAGTTTTCAATCAATGAATATGAATTAATTTATTTTGATTAATTAATTTAACCAATGAACATGAATCATTTACTTAACTTTTCTAAGTTGGTCAAATGTATGTTTTCAATGCTAATAATTCACAAGGGTAAAAAAGGAACAATATGCTAATTTATGCATTGATTTTATGAAATGACAAGTATTATGGACCAACTATTTATAGAAAGGGATAACATATAAAATGGGACGGAGGGAGTA

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