SE3820402

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_8720
  • Solanum tuberosum
  • SE3820402
  • Mutator
  • M7
  • chr06:4227418-4227805
  • TATATTCAA
  • AGAGACAAGTATCAAAAACACATCTAAACTTGATGCAAATTATTAATTTCATCTCCGAACTATTGACAGCCTTAAAAACACCTCCTTACTTGACTAATTGAAGCTAAATACACCCCTGATCTTGCAACAT

Secondary structure and sequence

TSD    TIR
5'



3' 
TATATTCA    AC          AA   A   -       A  C         A        CC   C                     C     -               GC  A      C      CT        -T   GAAATACACCCCTAAATTCTCCTCAAGTTTAGAGATGTATTCAATACTTTTC
        AGAG  AAGTATCAAA  CAC TCT AAACTTG TG AAATTATTA TTTCATCT  GAA TATTGACAGCCTTAAAAACAC TCCTT ACTTGACTAATTGAA  TA ATACAC CCTGAT  TGCAACAT  AGT                                                    
        ||||  ||||||||||  ||| ||| ||||||| || ||||||||| ||||||||  ||| ||||||||||||||||||||| ||||| |||||||||||||||  || |||||| ||||||  ||||||||  |||                                                     
        TCTC  TTCATAGTTT  GTG GGA TTTGAAC GC TTTAATAAT AAAGTAGG  CTT ATAACTGTCGGAATTTTTGTG AGGAG TGAACTGATTGATTT  AT TATGTG GGGTTA  ACGTTGTA  GTA                                                    
AACTTATA    AC          TG   -   A       C  A         C        AA   A                     -     A               GA  C      A      -T        CT   TTGTTTACCAGAGTTTGAGAATATCCTCGTACCTCAAAAATTATTTTTAGCT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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