SE3820403

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_8721
  • Solanum tuberosum
  • SE3820403
  • Mutator
  • M6
  • chr12:57536550-57536849
  • TAGGGAAAA
  • TAGGGAAAAGGGTCTGAAAAATACTCTAATTTTGGCTGAAATTGTTGTTACGATACCAAACTTTATGGAGGACCTTTTACCCCCTGCACTATTTAATAGTGTATTTTAAAGGTATATATGTGCCCACGTGGACACATTACTATT

Secondary structure and sequence

TSD    TIR
5'



3' 
                                                                                                                            C         -   TAC    TAAAA
TAGGGAAAAGGGTCTGAAAAATACTCTAATTTTGGCTGAAATTGTTGTTACGATACCAAACTTTATGGAGGACCTTTTACCCCCTGCACTATTTAATAGTGTATTTTAAAGGTATATATGTGCC ACGTGGACA CAT   TATT     
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||   ||||     T
ATCCCTTTTCCCAGACTTTTTATGAGATTAAAACCGACTTTAACAACAATGCTATGGTTTGAAATACCTCCTGGAAAATGGGGGACGTGATAAATTATCACATAAAATTTCCATATATATACGG TGCACCTGT GTA   ATAA     
                                                                                                                            A         A   TTT    CGTAG
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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