SE3850406

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_8724
  • Solanum tuberosum
  • SE3850406
  • PIF/harbinger
  • To5
  • PGSC0003DMB000000456:190719-191189
  • TAA
  • AGGGGTTGTTTCGTAGAGTGTATTGGAGAA

Secondary structure and sequence

TSD    TIR
5'



3' 
TA           C           TG     AAC    -  TGCAATTAACTTGATGTATTATTAGTACCTTGTTTGGTACACTTTTCTAACCTATACATAACTAATGCTTGTATTAGTAATACACTCTATTGTGTATTGAAGAGTGTATTACTAATACCATTTATTTCTATGCATTAGTAATGCAATGGGTTCTAATGCATGCATTAACATTATTAAAGGCACAATTGCCCTCAAA
  AGGGGTTGTTT GTAGAGTGTAT  GAGAA   AATG CT                                                                                                                                                                                                    
  ||||||||||| |||||||||||  |||||   |||| ||                                                                                                                                                                                                    A
  TCCCCAACAAA CATCTCACATA  TTCTT   ATTA GT                                                                                                                                                                                                    
AA           C           --     ---    C  TTTATATCACATAATCATTACGAACGTAATCATTGCGAACATAATCAATACGAACGTAATCAATACTATTCTATAAAAAATACGTTACAAACCAAACCACATGATTTTTATAATACGTAATGTATCAAAAAAATCTTTTTTATAAACAAATGTTTTTATGGGAGTTGTTTATATTACCTTTCCTACATTTTTTTCA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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