SE3820408

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_8726
  • Solanum tuberosum
  • SE3820408
  • Mutator
  • M7
  • chr08:35674571-35674957
  • ATTTAGTTA
  • GAGAAAAGTATTGAAAACACCCCTACACTAGGTGTGAATTATTAGTTTCATCTCTAAACTATTGACAGCTTTAAAAACATTCATTTACTTGACTAACTGAACTTAAATACACACCTGAT

Secondary structure and sequence

TSD    TIR
5'



3' 
ATTTAGTTA    A    A         C     C   A                         A                                                 A     CA      CTTACAACAT       ATACACCCCTAAATTCTCGCCAAGTTTAGGATGTTTTCAACATTTTTCTCGAC
         GAGA AAGT TTGAAAACA CCCTA ACT GGTGTGAATTATTAGTTTCATCTCT AACTATTGACAGCTTTAAAAACATTCATTTACTTGACTAACTGAACTTA ATACA  CCTGAT          GAGTGAA                                                     
         |||| |||| ||||||||| ||||| ||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||  ||||||          |||||||                                                     T
         CTCT TTCA AACTTTTGT GGGAT TGA TTGCGTTTAATAATCAAAGTAGGGG TTGATAACTGTTGGAATTTTTGTGGGTAGATGAACTGATTGATTTGAAT TATGT  GGGTTA          AACGGTG                                                     
ATTGATTTA    C    C         A     T   A                         C                                                 C     AG      ----------       TTCTGTATCGTTCACCAGAATTTGAGATCATACTGCACATTGAGAATTATTTT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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