SE3830411

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_8729
  • Solanum tuberosum
  • SE3830411
  • hAT
  • Hat3
  • chr01:89727296-89727497
  • ATAACATC
  • CAGGGGCGGAGGCAG

Secondary structure and sequence

TSD    TIR
5'



3' 
ATAACATC   G       G   -CATATACC           --------------------    AACCCCCTCTGCGGAAAATATTACTATTTATACATGGTTAAAAT
        CAG GGCGGAG CAG         TAAGGGGTTCA                    TCCG                                            
        ||| ||||||| |||         |||||||||||                    ||||                                            T
        GTC CCGCCTC GTC         ATTCCCCAAGT                    GCTT                                            
CTACAATA   A       G   TTAAAAATT           TTTAAACTCTTCATTTGTGT    GATCACCTTCCCCCAAGCTGTAGATAATATGTATGGATTTTTTA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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