Plant MITE

SE3820412

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_8730
Solanum tuberosum
SE3820412
Mutator
M6
chr12:62558809-62559123
TAATAATAA
AGGGAAAATGGTTTGAAAAACACTCCAACTTTGGTCGAAATTGTTGTTACGATATCAAACTTTGAAAAGGACCTTTTACCCACATGTACTATTTAATAGTGTATTTTAAAGGTATATATGTGCCTACGTGGACATCATAAATATT

Secondary structure and sequence

TSD TIR

5'

3'

TAATAATA        T           C   CC                                 C    AAA              A A                                                  T   AAA    GCATC
        AGGGAAAA GGTTTGAAAAA ACT  AACTTTGGTCGAAATTGTTGTTACGATATCAAA TTTG   AGGACCTTTTACCC C TGTACTATTTAATAGTGTATTTTAAAGGTATATATGTGCCTACGTGGACA CAT   TATT     
        |||||||| ||||||||||| |||  ||||||||||||||||||||||||||||||||| ||||   |||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||| |||   ||||     A
        TCCCTTTT CCAAACTTTTT TGA  TTGAAACCGGCTTTAACAACAATGTTATGGTTT AAAT   TTCTGGAAAATGGG G ACGTGATAAATTATCACATAAAATTTCCATATATACACGGGTGCACCTGT GTA   ATAA     
AATAATAA        C           A   AA                                 A    ACC              - G                                                  -   ATG    ATTTT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3820412

TAATAATAAGGGAAAATGGTTTGAAAAACACTCCAACTTTGGTCGAAATTGTTGTTACGATATCAAACTTTGAAAAGGACCTTTTACCCACATGTACTATTTAATAGTGTATTTTAAAGGTATATATGTGCCTACGTGGACATCATAAATATTGCATCATTTTAAATAGTAATGTGTCCACGTGGGCACATATATACCTTTAAAATACACTATTAAATAGTGCAGGGGGTAAAAGGTCTTCCATAAAATTTGGTATTGTAACAACAATTTCGGCCAAAGTTAAAGTATTTTTCAAACCCTTTTCCCTAATAATAA

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