SE3850415

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_8733
  • Solanum tuberosum
  • SE3850415
  • PIF/harbinger
  • To4
  • chr11:36981742-36982444
  • TTA
  • GCTAGCGTTTGGCCATAGATTTCC

Secondary structure and sequence

TSD    TIR
5'



3' 
  TTA   AG                   AAATATTTTTGA      TT       T A       -------     AATTTCACCATGTGTTTGGCCATAATATTTGGTAAATATATTTCACTTTTTAAATAAATATGATTTATACCCATAAGTTTTAAAAACTATCAAAATTAACCATAAGTTTGTATTTCATAGCAAGATAGAAACGTAGACGTAACAAGATTCATGACTTCCGCAACAAGTCAATTGGATCTTCGTTGCAACAAATAACTAGTATCCATGACATTGGAGTAATGCGGTAGTTTGGAATGAGTGCAACAAGCATCATTCCATACATCATGAAGTAGACGAAACACGTGA
     GCT  CGTTTGGCCATAGATTTCC            CAAATA  ATTTGGG G GAATTTG       GGTGA                                                                                                                                                                                                                                                                                             
     |||  |||||||||||||||||||            ||||||  ||||||| | |||||||       |||||                                                                                                                                                                                                                                                                                              
     TGG  GTAAACCGGTATCTAAAGG            GTTTAT  TAAACCC C TTTAAAC       CACAA                                                                                                                                                                                                                                                                                             
ATTCC   --                   ------------      TT       C C       CGTTTAT     ACAGGTATATTAAACGATAATAAACTGTTTATAAAAACCGTTTATTGGGTTTATGATCTTTTTTGATCATAGATCCGGTTTAGAGTAATAAACCATTGAAAATTTTTAAGTTTAAGATGTGGTTTGAAAGTAGAAAATGTTTTTGTGGTAGATATCATAAACAAACGCAATATAATGTATTAAAAAATGCACTTGTGGTTTCGTCACTATTTTATAAGTTACTTATACTTTCACTACTATACCAACAACTACTTTTACTGCTTGTTAGCTGAATCACATTATTTC
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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