Plant MITE

SE3820416

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_8734
Solanum tuberosum
SE3820416
Mutator
M3
chr07:7495543-7495904
TTTAGAGAA
GAAGGGAAAAAGGGAAAATATACCCCGAACTATTGTAAATGGTATGCATATATCCTCCGTCATACTTTTGGGACATTGGTGCCCCTGCCGTCCAAAAACTAGAACATATATACCCTTTATACTAACGGACAT

Secondary structure and sequence

TSD TIR

5'

3'

TTTAGA              A           -                      T                        C                             A       A        A     --------------      ACAA   -  A         C AC   C  A      A
      GAAGGGAAAAAGGG AAATATACCCC GAACTATTGTAAATGGTATGCA ATATCCTCCGTCATACTTTTGGGA ATTGGTGCCCCTGCCGTCCAAAAACTAGA CATATAT CCCTTTAT CTAAC              GGACAT    GTG TC TAATCTTAT C  CGA CC ATATTT 
      |||||||||||||| ||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||| |||||||| |||||              ||||||    ||| || ||||||||| |  ||| || |||||| T
      TTTCCCTTTTTCCT TTTATATGGGG CTTGATAGCATTTACCATACGT TATAGGAGGTAGTATGAAAACCCT TAACCACGGGGACGGCAGGTTTTTGATCT GTATATA GGGAAGTG GATTG              CCTGTG    CAC GG GTTAGAATA G  GCT GG TATAAA 
AAGAGA              G           G                      C                        A                             C       C        A     TCTTCTAATTTATC      ----   C  -         A CA   A  C      T

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3820416

TTTAGAGAAGGGAAAAAGGGAAAATATACCCCGAACTATTGTAAATGGTATGCATATATCCTCCGTCATACTTTTGGGACATTGGTGCCCCTGCCGTCCAAAAACTAGAACATATATACCCTTTATACTAACGGACATACAAGTGTCATAATCTTATCCACCGACCCAATATTTATTAAATATCGGATCGACGAATAAGATTGGGCCACGTGTCCCTATTTAATCTTCTGTTAGAGTGAAGGGCATATATGCTCTAGTTTTTGGACGGCAGGGGCACCAATATCCCAAAAGTATGATGGAGGATATCTGCATACCATTTACGATAGTTCGGGGGTATATTTGTCCTTTTTCCCTTTAGAGAA

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