SE3820417

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_8735
  • Solanum tuberosum
  • SE3820417
  • Mutator
  • M52
  • chr11:35071812-35071975
  • GATGGAAAT
  • GGGTTGATTTCTCATATGGTCACTCAACTAATAGTTGTT

Secondary structure and sequence

TSD    TIR
5'



3' 
GATGGAAATA     -                      C           ATTATC       A        C  C    TTACA
          GGGTT GATTTCTCATATGGTCACTCAA TAATAGTTGTT      TCAGAAA TCACTTTT TT TTGA     
          ||||| |||||||||||||||||||||| |||||||||||      ||||||| |||||||| || ||||     A
          CTCAA CTAAAGAGTGTACCAGTGAGTT ATTATCAATAA      AGTCTTT AGTGAAAG AA AACT     
ATAAAGGTAG     T                      C           ------       C        A  C    TTTTT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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