Plant MITE

SE3840420

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_8738
Solanum tuberosum
SE3840420
CACTA
Ca1
chr09:21772086-21772310
CAT
CACTACATCAAAAATGATCTTTAGCGGCAATTAAT

Secondary structure and sequence

TSD TIR

5'

3'

CAT       -      ATG      -         T   TAA     ATAGTTCAATTGCCACTAAATATGTATTTTTAGAGGCAATCAACACTCTTTGTATATGTCCCTAAAA
   CACTACA TCAAAA   ATCTTT AGCGGCAAT AAT   CGGCA                                                                   
   ||||||| ||||||   |||||| ||||||||| |||   |||||                                                                   C
   GTGATGT AGTTTT   TGGAAA TCGCCGTTA TTA   TTGTG                                                                   
TAC       T      --G      A         T   --T     TAATTATTTCTCACAATTTCGAAAATGGCCGTAATCAATTCACAATAATCTAGGTTACAACGATTTC

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3840420

CATCACTACATCAAAAATGATCTTTAGCGGCAATTAATTAACGGCAATAGTTCAATTGCCACTAAATATGTATTTTTAGAGGCAATCAACACTCTTTGTATATGTCCCTAAAACCTTTAGCAACATTGGATCTAATAACACTTAACTAATGCCGGTAAAAGCTTTAACACTCTTTATTAATGTGTTTATTTATTGCCGCTAAAAGGTGTTTTGATTGTAGTGCAT

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