SE3820421

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_8739
  • Solanum tuberosum
  • SE3820421
  • Mutator
  • M32
  • chr10:15072546-15073302
  • TTTTAATCA
  • TTAATCAGAGATTAACTTCTCTCCACTGTCAGTGGACAAGAAAATTACACCGTCTATTTTTTTTAGAAATATTTATTTC

Secondary structure and sequence

TSD    TIR
5'



3'
 TT    TC        A             T                         T    -                    -GT    TTT  -     - T   -  CATATTTAAAGATTAATGATTTTTCAACTTGTCCTTTTCTTTTTTTCAAACACGTTTTAAAGATTTAAGATTTTTTTTTAAAGAACATTCAAACATTTTTGATACTATTGACTTTGAGTATTATTTAAATAAATTGGAGTACATATGATGATATATGGATCAAAGTATGTTTTCAATTAAATTTTGTATTGTTGATTGAATGAAACTAAGAAGAGAAAACACAGTCTGAAGCAATGGAAGCACTTATCCAAAAAAATAATAATTCATATTGCGA
   TTAA  AGAGATTA CTTCTCTCCACTG CAGTGGACAAGAAAATTACACCGTC ATTT TTTTTAGAAATATTTATTTC   TTGA   AA TTATT A ATT TT                                                                                                                                                                                                                                                                                  
   ||||  |||||||| ||||||||||||| ||||||||||||||||||||||||| |||| ||||||||||||||||||||   ||||   || ||||| | ||| ||                                                                                                                                                                                                                                                                                   
   AATT  TCTCTAAT GAAGAGAGGTGAC GTCACCTGTTCTTTTAATGTGGCAG TAAG AAAAATCTTTATGAATAAAG   ATTG   TG AAGTG A TAA AA                                                                                                                                                                                                                                                                                  
ACT    -T        C             T                         T    T                    AAA    ---  T     T -   T  TTATAAATTTATTCTTATTCATTTTTTATAATAAATCATTGAACCTGAGATTTAATTAGTATCCTCAAACAAATCCTAAGAATAAACCAACGGTTTTTATTCTTCCTAATAAAATGGCGAAAGAACAGGAGTAATAAAAGTGGGGCAAGAGGTAGTTGTGGTAACTTCGTTAAACTCTATTAGTAGTTACCATTGAAGAATGAAGAAAAAAAGAAAAATTTTAGATCTGATTAATTAGAGTAATTTTTTTATAAGTATTGAATAATTCAGAAGA

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End