Plant MITE

SE3820431

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_8749
Solanum tuberosum
SE3820431
Mutator
M29
chr07:577678-578000
AGGGAAAAT
GGGAAAATGCATAAGTACCCCCTAATATATGTCCGAAATCATAGAGACACACTTGTACTATACTAAGGTCCTATTA

Secondary structure and sequence

TSD TIR

5'

3'

A                     -  --   A            CA            T                      CCTTCCT                                        A                TT  -----  GCCCAGCACGCGTT
 GGGAAAATGCATAAGTACCCC CT  AAT TATGTCCGAAAT  TAGAGACACACT GTACTATACTAAGGTCCTATTA       CCCTCGAACTTATTTTATAAATAATTTTTTACTTTTTTCG CCTACGTGGCACTATC  CT     GC              
 ||||||||||||||||||||| ||  ||| ||||||||||||  |||||||||||| ||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||  ||     ||               
 CCCTTTTACGTATTCATGGGG GG  TTG ATACGGGCTTTA  GTCTCTGTGTGA TATGATATGATTCCAGGATAAT       GGGGGCTTGAATAAAATATTTATTAAAAGATGGGAAAAGC GGATGCACCGTGATAG  GA     CG              
A                     T  AG   G            AG            T                      -------                                        C                TT  TCTAT  AACTTTTTTAATAG

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3820431

AGGGAAAATGCATAAGTACCCCCTAATATATGTCCGAAATCATAGAGACACACTTGTACTATACTAAGGTCCTATTACCTTCCTCCCTCGAACTTATTTTATAAATAATTTTTTACTTTTTTCGACCTACGTGGCACTATCTTCTGCGCCCAGCACGCGTTGATAATTTTTTCAAGCTATCTAGTTGATAGTGCCACGTAGGCCGAAAAGGGTAGAAAATTATTTATAAAATAAGTTCGGGGGTAATAGGACCTTAGTATAGTATTAGTGTGTCTCTGGAATTTCGGGCATAGGTTGAGGTGGGGTACTTATGCATTTTCCCA

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