SE3820432

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_8750
  • Solanum tuberosum
  • SE3820432
  • Mutator
  • M6
  • chr04:34761100-34761415
  • TAATAAATA
  • TAGGGAAAAAGGTCTAAAATATATCCAAACTTTGACCGAAATTGTTGTAACGATATCAAACTTTGGAAAGGACTTTTTACCCCCTGCACTATTTAATAGTGTATTTTAAAGGTATATATGTGCCCACATGGACATCATAAATATT

Secondary structure and sequence

TSD    TIR
5'



3' 
TAATAAA         A         -T   -     A     A             A       C        GAA              - C                                           A      T   AAA    GCATA
       TAGGGAAAA GGTCTAAAA  ATA TCCAA CTTTG CCGAAATTGTTGT ACGATAT AAACTTTG   AGGACTTTTTACCC C TGCACTATTTAATAGTGTATTTTAAAGGTATATATGTGCCCAC TGGACA CAT   TATT     
       ||||||||| |||||||||  ||| ||||| ||||| ||||||||||||| ||||||| ||||||||   |||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||| |||||| |||   ||||     A
       ATCCCTTTT CCAGATTTT  TAT AGGTT GAAAC GGCTTTAACAACA TGCTATG TTTGAAAT   TCCTGGAAAATGGG G ACGTGATAAATTATCACATAAAATTTCCATATATACACGGGTG ACCTGT GTA   ATAA     
ATAAATA         C         TT   G     -     C             A       T        ACC              A A                                           C      -   ATG    ATATT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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