Plant MITE

SE3810434

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_8752
Solanum tuberosum
SE3810434
Tc1/Mariner
St1
chr10:46555670-46555946
TA
TACTCCCTATGTCCCTAATTACTTGTCTACTTTT

Secondary structure and sequence

TSD TIR

5'

3'

             C                    ----GAATTGACACA    --T       ACAATTATTGACATAGTGAGTTTACCATTTTACCCCTATTAATTATGAAGTGGATGAATTAAAAAATTAATATTTCAA
TACTCCCTATGTC CTAATTACTTGTCTACTTTT               CCTA   TAAGAAA                                                                              
||||||||||||| ||||||||||||||||||||               ||||   |||||||                                                                              A
ATGAGGGATACAG GATTAATGAACAGGTGAAAA               GGAT   TGAACAG                                                                              
             A                    AGAAAATATCAACAG    TAA       GTAAAACTGTTTAGTTCTTTACTGTTGTAAAAAAAGGATAATATGGGAGTTAATTAATGAAACTTTTTCCATCTTAAA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3810434

TACTCCCTATGTCCCTAATTACTTGTCTACTTTTGAATTGACACACCTATTAAGAAAACAATTATTGACATAGTGAGTTTACCATTTTACCCCTATTAATTATGAAGTGGATGAATTAAAAAATTAATATTTCAAAAAATTCTACCTTTTTCAAAGTAATTAATTGAGGGTATAATAGGAAAAAAATGTTGTCATTTCTTGATTTGTCAAAATGGACAAGTAATTAGGGACAACTATAAAAGAAAAAGTGGACAAGTAATTAGAGACATAGGGAGTA

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