SE3830435

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_8753
  • Solanum tuberosum
  • SE3830435
  • hAT
  • Hat19
  • chr01:35652139-35652275
  • ATAAGCAG
  • GCAGCTATGTTGCTCGGACTCTTCAAAAATGTCGACGGATGCGTGTCGGATCCTCCAAAA

Secondary structure and sequence

TSD    TIR
5'



3' 
ATAA  --AG   T                        C A  G  G             -      ATAG
    GC    CTA GTTGCTCGGACTCTTCAAAAATGT G CG AT CGTGTCGGATCCT CCAAAA    
    ||    ||| |||||||||||||||||||||||| | || || ||||||||||||| ||||||     
    CG    GAT CAACGAGCCTGAGAGGTTTTTATA C GC TG GCACAGCCTAGGA GGTTTT    
  GA  AATA   T                        A G  G  G             A      ATGT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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